Uses of Class
uk.ac.vamsas.objects.core.AlignmentAnnotation

Packages that use AlignmentAnnotation

uk.ac.vamsas.objects
uk.ac.vamsas.objects.core

Uses of AlignmentAnnotation in uk.ac.vamsas.objects

Methods in uk.ac.vamsas.objects with parameters of type AlignmentAnnotation

void	EmptyDocumentUpdater.update(AlignmentAnnotation vobj)
void	IDocumentUpdater.update(AlignmentAnnotation vobj)

Uses of AlignmentAnnotation in uk.ac.vamsas.objects.core

Methods in uk.ac.vamsas.objects.core that return AlignmentAnnotation

AlignmentAnnotation	Alignment.getAlignmentAnnotation(int index) Method getAlignmentAnnotation.
AlignmentAnnotation[]	Alignment.getAlignmentAnnotation() Method getAlignmentAnnotation.Returns the contents of the collection in an Array.
AlignmentAnnotation	Alignment.removeAlignmentAnnotationAt(int index) Method removeAlignmentAnnotationAt.

Methods in uk.ac.vamsas.objects.core with parameters of type AlignmentAnnotation

void	Alignment.addAlignmentAnnotation(AlignmentAnnotation vAlignmentAnnotation)
void	Alignment.addAlignmentAnnotation(int index, AlignmentAnnotation vAlignmentAnnotation)
boolean	Alignment.removeAlignmentAnnotation(AlignmentAnnotation vAlignmentAnnotation) Method removeAlignmentAnnotation.
void	Alignment.setAlignmentAnnotation(int index, AlignmentAnnotation vAlignmentAnnotation)
void	Alignment.setAlignmentAnnotation(AlignmentAnnotation[] vAlignmentAnnotationArray)