Uses of Class
uk.ac.vamsas.objects.core.AlignmentSequence

Packages that use AlignmentSequence

uk.ac.vamsas.objects
uk.ac.vamsas.objects.core
uk.ac.vamsas.objects.utils

Uses of AlignmentSequence in uk.ac.vamsas.objects

Methods in uk.ac.vamsas.objects with parameters of type AlignmentSequence

void	EmptyDocumentUpdater.update(AlignmentSequence vobj)
void	IDocumentUpdater.update(AlignmentSequence vobj)

Uses of AlignmentSequence in uk.ac.vamsas.objects.core

Methods in uk.ac.vamsas.objects.core that return AlignmentSequence

AlignmentSequence	Alignment.getAlignmentSequence(int index) Method getAlignmentSequence.
AlignmentSequence[]	Alignment.getAlignmentSequence() Method getAlignmentSequence.Returns the contents of the collection in an Array.
AlignmentSequence	Alignment.removeAlignmentSequenceAt(int index) Method removeAlignmentSequenceAt.

Methods in uk.ac.vamsas.objects.core with parameters of type AlignmentSequence

void	Alignment.addAlignmentSequence(AlignmentSequence vAlignmentSequence)
void	Alignment.addAlignmentSequence(int index, AlignmentSequence vAlignmentSequence)
boolean	Alignment.removeAlignmentSequence(AlignmentSequence vAlignmentSequence) Method removeAlignmentSequence.
void	Alignment.setAlignmentSequence(int index, AlignmentSequence vAlignmentSequence)
void	Alignment.setAlignmentSequence(AlignmentSequence[] vAlignmentSequenceArray)

Uses of AlignmentSequence in uk.ac.vamsas.objects.utils

Methods in uk.ac.vamsas.objects.utils that return AlignmentSequence

static AlignmentSequence

Seq.newAlignmentSequence(java.lang.String name, java.lang.String alSequence, Sequence refseq, long start, long end)