Uses of Class
uk.ac.vamsas.objects.core.Provenance

Packages that use Provenance

uk.ac.vamsas.objects
uk.ac.vamsas.objects.core
uk.ac.vamsas.objects.utils
uk.ac.vamsas.test.simpleclient

Uses of Provenance in uk.ac.vamsas.objects

Methods in uk.ac.vamsas.objects with parameters of type Provenance

void	EmptyDocumentUpdater.update(Provenance vobj)
void	IDocumentUpdater.update(Provenance vobj)

Uses of Provenance in uk.ac.vamsas.objects.core

Methods in uk.ac.vamsas.objects.core that return Provenance

Provenance	Alignment.getProvenance() Returns the value of field 'provenance'.
Provenance	AlignmentAnnotation.getProvenance() Returns the value of field 'provenance'.
Provenance	AlignmentSequenceAnnotation.getProvenance() Returns the value of field 'provenance'.
Provenance	DataSet.getProvenance() Returns the value of field 'provenance'.
Provenance	DataSetAnnotations.getProvenance() Returns the value of field 'provenance'.
static Provenance	Provenance.unmarshal(java.io.Reader reader) Method unmarshal.
Provenance	SequenceMapping.getProvenance() Returns the value of field 'provenance'.
Provenance	Tree.getProvenance() Returns the value of field 'provenance'.
Provenance	VamsasDocument.getProvenance() Returns the value of field 'provenance'.

Methods in uk.ac.vamsas.objects.core with parameters of type Provenance

void	Alignment.setProvenance(Provenance provenance) Sets the value of field 'provenance'.
void	AlignmentAnnotation.setProvenance(Provenance provenance) Sets the value of field 'provenance'.
void	AlignmentSequenceAnnotation.setProvenance(Provenance provenance) Sets the value of field 'provenance'.
void	DataSet.setProvenance(Provenance provenance) Sets the value of field 'provenance'.
void	DataSetAnnotations.setProvenance(Provenance provenance) Sets the value of field 'provenance'.
void	SequenceMapping.setProvenance(Provenance provenance) Sets the value of field 'provenance'.
void	Tree.setProvenance(Provenance provenance) Sets the value of field 'provenance'.
void	VamsasDocument.setProvenance(Provenance provenance) Sets the value of field 'provenance'.

Uses of Provenance in uk.ac.vamsas.objects.utils

Methods in uk.ac.vamsas.objects.utils that return Provenance

static Provenance	ProvenanceStuff.newProvenance(Entry entry)
static Provenance	ProvenanceStuff.newProvenance(java.lang.String user, java.lang.String action)
static Provenance	ProvenanceStuff.newProvenance(java.lang.String app, java.lang.String user, java.lang.String action)

Methods in uk.ac.vamsas.objects.utils with parameters of type Provenance

static VamsasDocument

DocumentStuff.newVamsasDocument(VAMSAS[] root, Provenance p, java.lang.String version)

Uses of Provenance in uk.ac.vamsas.test.simpleclient

Methods in uk.ac.vamsas.test.simpleclient with parameters of type Provenance

static boolean

ArchiveReports.reportProvenance(Provenance p, java.io.PrintStream outstr) print an informative summary on a VamsasDocument